Package: JWileymisc 1.4.2

JWileymisc: Miscellaneous Utilities and Functions

Miscellaneous tools and functions, including: generate descriptive statistics tables, format output, visualize relations among variables or check distributions, and generic functions for residual and model diagnostics.

Authors:Joshua F. Wiley [aut, cre]

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JWileymisc.pdf |JWileymisc.html✨
JWileymisc/json (API)
NEWS

# Install 'JWileymisc' in R:

install.packages('JWileymisc', repos = c('https://jwiley.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jwiley/jwileymisc/issues

Datasets:

aces_daily - Multilevel Daily Data Example

On CRAN:

8.02 score 6 stars 4 packages 243 scripts 958 downloads 1 mentions 59 exports 144 dependencies

Last updated 9 months agofrom:86290e47eb. Checks:OK: 5 NOTE: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 09 2024
R-4.5-win	NOTE	Oct 09 2024
R-4.5-linux	NOTE	Oct 09 2024
R-4.4-win	OK	Oct 09 2024
R-4.4-mac	OK	Oct 09 2024
R-4.3-win	OK	Aug 10 2024
R-4.3-mac	OK	Aug 10 2024

Exports:.fround .quantilePercentiles APAStyler as.modelCompare as.modelDiagnostics as.modelPerformance as.modelTest as.na as.residualDiagnostics as.testDistribution cd compareIVs cor2cov corOK corplot cramerV diffCircular egltable empirical_pvalue findSigRegions formatHtest formatMedIQR formatPval geom_tufterange gglikert hashDataset intSigRegGraph is.modelCompare is.modelDiagnostics is.modelPerformance is.modelTest is.naz is.residualDiagnostics is.testDistribution lagk meanCircular modelCompare modelDiagnostics modelPerformance modelTest moments naz.omit param_summary param_summary_format R2 readRDSfst residualDiagnostics saveRDSfst scaleScore SEMSummary smd star testDistribution theme_tufte timeshift TufteRange TukeyHSDgg VAConverter winsorizor

Dependencies:abind backports base64enc bit bit64 boot broom bslib cachem car carData checkmate cli clipr cluster codetools colorspace corrplot cowplot cpp11 crayon data.table DEoptimR Deriv digest doBy dplyr emmeans estimability evaluate extraoperators fansi farver fastmap fontawesome forcats foreach foreign Formula fs fst fstcore generics ggplot2 ggpubr ggrepel ggsci ggsignif glmnet glue GPArotation gridExtra gtable haven highr Hmisc hms htmlTable htmltools htmlwidgets isoband iterators jomo jquerylib jsonlite knitr labeling lattice lavaan lifecycle lme4 magrittr MASS Matrix MatrixModels memoise mgcv mice microbenchmark mime minqa mitml mnormt modelr multcomp multcompView munsell mvtnorm nlme nloptr nnet numDeriv ordinal pan pbivnorm pbkrtest pillar pkgconfig polspline polynom prettyunits progress psych purrr quadprog quantreg R6 rappdirs RColorBrewer Rcpp RcppEigen readr rlang rmarkdown rms robustbase rpart rstatix rstudioapi sandwich sass scales shape SparseM stringi stringr survival TH.data tibble tidyr tidyselect tinytex tzdb ucminf utf8 vctrs VGAM viridis viridisLite vroom withr xfun yaml zoo

Diagnostics

Joshua F. Wiley

Rendered fromdiagnostics-vignette.Rmdusingknitr::rmarkdownon Oct 09 2024.

Last update: 2023-12-14
Started: 2019-11-02

Exploratory and Descriptive Statistics and Plots

Rendered fromexploratory-vignette.Rmdusingknitr::rmarkdownon Oct 09 2024.

Last update: 2023-12-14
Started: 2019-11-02

Model Performance and Tests

Joshua F. Wiley

Rendered frommodel-test-vignette.Rmdusingknitr::rmarkdownon Oct 09 2024.

Last update: 2023-12-14
Started: 2019-11-11

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Function to round and format a number	.fround
Internal Function to Calculate Quantiles	.quantilePercentiles
Multilevel Daily Data Example	aces_daily
A generic function for pretty printing in (semi) APA Style	APAStyler
APAStyler method for lists	APAStyler.list
APAStyler method for linear models	APAStyler.lm
A generic function for pretty printing in (semi) APA Style	APAStyler.mira
APAStyler method for model tests from a linear model	APAStyler.modelTest.lm
APAStyler method for model tests from a vglm multinomial model	APAStyler.modelTest.vglm
A generic function for pretty printing in (semi) APA Style	APAStyler.SEMSummary
Coerces vectors to missing	as.na
Change directory	cd
Compares the effects of various independent variables on dependent variables	compareIVs
Save and read RDS functions for using multithreaded "ZSTD" or "LZ4" compression	compressed RDS readRDSfst saveRDSfst
Convert a correlation matrix and standard deviations to a covariance matrix	cor2cov
Return a non-missing correlation matrix	corOK
Heatmap of a Correlation Matrix	corplot
Calculate Phi or Cramer's V effect size	cramerV
Calculate the Circular Difference	diffCircular
Function makes nice tables	egltable
Calculates an empirical p-value based on the data	empirical_pvalue
Function to find significant regions from an interaction	findSigRegions
Function to format the reuslts of a hypothesis test as text	formatHtest
Function to format the median and IQR of a variable	formatMedIQR
Function to simplify formatting p-values for easy viewing / publication	formatPval
Tufte Range	geom_tufterange TufteRange
Creates a plot for likert scale	gglikert
Create a character vector or file hash of a dataset and each variable	hashDataset
Function to find significant regions from an interaction	intSigRegGraph
Is a variable missing, non finite or zero length character?	is.naz
Create a lagged variable	lagk
Modified lm() to use a specified design matrix	lm2
Calculate a Circular Mean	meanCircular
Compare Two Models	as.modelCompare is.modelCompare modelCompare modelCompare.lm
Model Diagnostics Functions	as.modelDiagnostics is.modelDiagnostics modelDiagnostics modelDiagnostics.lm
Return Indices of Model Performance	as.modelPerformance is.modelPerformance modelPerformance modelPerformance.lm
Detailed Tests on Models	as.modelTest is.modelTest modelTest modelTest.lm modelTest.vglm
Estimate the first and second moments	moments
Missing and Zero Character Omit	naz.omit
Calculates summaries for a parameter	param_summary
Format a data frame of summary statistics	param_summary_format
Plot Diagnostics for an lm model	plot.modelDiagnostics.lm
Plot Residual Diagnostics Default Method	plot.residualDiagnostics
Plots SEMSummary object	plot.SEMSummary
Plots SEMSummary.list object	plot.SEMSummary.list
Plot method for testDistribution objects	plot.testDistribution
Calculate R2 Values	R2 R2.lm
Residual Diagnostics Functions	as.residualDiagnostics is.residualDiagnostics residualDiagnostics residualDiagnostics.lm
Calculate a rounded five number summary	roundedfivenum
Summary Statistics for a SEM Analysis	SEMSummary
Summary Statistics for a SEM Analysis	SEMSummary.fit
Calculate Standardized Mean Difference (SMD)	smd
Function to simplify converting p-values to asterisks	star
Test the distribution of a variable against a specific distribution	as.testDistribution is.testDistribution testDistribution testDistribution.default
Tufte Inspired Theme	theme_tufte
Shift a time variable to have a new center (zero point)	timeshift
Tukey HSD Plot	TukeyHSDgg
Visual Acuity Converter	VAConverter
An S4 class to hold visual acuity data	print,VAObject-method show,VAObject-method summary,VAObject-method VAObject-class [,VAObject,ANY,ANY,ANY-method [,VAObject-method
An S4 class to hold visual acuity summary data	plot,VASummaryObject,missing-method show,VASummaryObject-method VASummaryObject-class
Winsorize at specified percentiles	winsorizor